Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=5175

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=5200",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=5150",
    "results": [
        {
            "id": 5164,
            "identifier": "10201",
            "identifier_type": "int",
            "name": "NME6",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10201",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "NME/NM23 nucleoside diphosphate kinase 6"
            },
            "metanode": "Gene"
        },
        {
            "id": 5165,
            "identifier": "DB06730",
            "identifier_type": "str",
            "name": "Gestodene",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB06730",
                "inchi": "InChI=1S/C21H26O2/c1-3-20-11-9-17-16-8-6-15(22)13-14(16)5-7-18(17)19(20)10-12-21(20,23)4-2/h2,10,12-13,16-19,23H,3,5-9,11H2,1H3/t16-,17+,18+,19-,20-,21-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=SIGSPDASOTUPFS-XUDSTZEESA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 5166,
            "identifier": "GO:0005109",
            "identifier_type": "str",
            "name": "frizzled binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0005109",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 5167,
            "identifier": "GO:0051233",
            "identifier_type": "str",
            "name": "spindle midzone",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0051233",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 5168,
            "identifier": "4035",
            "identifier_type": "int",
            "name": "LRP1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/4035",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "low density lipoprotein receptor-related protein 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 5169,
            "identifier": "8574",
            "identifier_type": "int",
            "name": "AKR7A2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/8574",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "aldo-keto reductase family 7, member A2 (aflatoxin aldehyde reductase)"
            },
            "metanode": "Gene"
        },
        {
            "id": 5170,
            "identifier": "GO:0019563",
            "identifier_type": "str",
            "name": "glycerol catabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0019563",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 5171,
            "identifier": "GO:0045667",
            "identifier_type": "str",
            "name": "regulation of osteoblast differentiation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0045667",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 5172,
            "identifier": "DB00726",
            "identifier_type": "str",
            "name": "Trimipramine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00726",
                "inchi": "InChI=1S/C20H26N2/c1-16(14-21(2)3)15-22-19-10-6-4-8-17(19)12-13-18-9-5-7-11-20(18)22/h4-11,16H,12-15H2,1-3H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=ZSCDBOWYZJWBIY-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 5173,
            "identifier": "10899",
            "identifier_type": "int",
            "name": "JTB",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10899",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "jumping translocation breakpoint"
            },
            "metanode": "Gene"
        },
        {
            "id": 5174,
            "identifier": "GO:0016706",
            "identifier_type": "str",
            "name": "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0016706",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 5175,
            "identifier": "10062",
            "identifier_type": "int",
            "name": "NR1H3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10062",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "nuclear receptor subfamily 1, group H, member 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 5176,
            "identifier": "GO:0070848",
            "identifier_type": "str",
            "name": "response to growth factor",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0070848",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 5177,
            "identifier": "GO:0000480",
            "identifier_type": "str",
            "name": "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0000480",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 5178,
            "identifier": "54883",
            "identifier_type": "int",
            "name": "CWC25",
            "properties": {
                "url": "http://identifiers.org/ncbigene/54883",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "CWC25 spliceosome-associated protein homolog (S. cerevisiae)"
            },
            "metanode": "Gene"
        },
        {
            "id": 5179,
            "identifier": "GO:0043552",
            "identifier_type": "str",
            "name": "positive regulation of phosphatidylinositol 3-kinase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0043552",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 5180,
            "identifier": "PC7_3361",
            "identifier_type": "str",
            "name": "E2F mediated regulation of DNA replication",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 5181,
            "identifier": "7186",
            "identifier_type": "int",
            "name": "TRAF2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/7186",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "TNF receptor-associated factor 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 5182,
            "identifier": "57336",
            "identifier_type": "int",
            "name": "ZNF287",
            "properties": {
                "url": "http://identifiers.org/ncbigene/57336",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "zinc finger protein 287"
            },
            "metanode": "Gene"
        },
        {
            "id": 5183,
            "identifier": "PC7_2507",
            "identifier_type": "str",
            "name": "Caspase-8 activation by cleavage",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 5184,
            "identifier": "100527963",
            "identifier_type": "int",
            "name": "PMF1-BGLAP",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100527963",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "PMF1-BGLAP readthrough"
            },
            "metanode": "Gene"
        },
        {
            "id": 5185,
            "identifier": "26039",
            "identifier_type": "int",
            "name": "SS18L1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/26039",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "20",
                "description": "synovial sarcoma translocation gene on chromosome 18-like 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 5186,
            "identifier": "GO:0014048",
            "identifier_type": "str",
            "name": "regulation of glutamate secretion",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0014048",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 5187,
            "identifier": "64328",
            "identifier_type": "int",
            "name": "XPO4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/64328",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "13",
                "description": "exportin 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 5188,
            "identifier": "GO:0005385",
            "identifier_type": "str",
            "name": "zinc ion transmembrane transporter activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0005385",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        }
    ]
}