Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=5700

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=5725",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=5675",
    "results": [
        {
            "id": 5689,
            "identifier": "3716",
            "identifier_type": "int",
            "name": "JAK1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3716",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "Janus kinase 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 5690,
            "identifier": "PC7_1223",
            "identifier_type": "str",
            "name": "Abnormal metabolism in phenylketonuria",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 5691,
            "identifier": "PC7_8066",
            "identifier_type": "str",
            "name": "TRP channels",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 5692,
            "identifier": "GO:0042509",
            "identifier_type": "str",
            "name": "regulation of tyrosine phosphorylation of STAT protein",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0042509",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 5693,
            "identifier": "GO:0030942",
            "identifier_type": "str",
            "name": "endoplasmic reticulum signal peptide binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0030942",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 5694,
            "identifier": "2073",
            "identifier_type": "int",
            "name": "ERCC5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2073",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "13",
                "description": "excision repair cross-complementation group 5"
            },
            "metanode": "Gene"
        },
        {
            "id": 5695,
            "identifier": "90665",
            "identifier_type": "int",
            "name": "TBL1Y",
            "properties": {
                "url": "http://identifiers.org/ncbigene/90665",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "Y",
                "description": "transducin (beta)-like 1, Y-linked"
            },
            "metanode": "Gene"
        },
        {
            "id": 5696,
            "identifier": "GO:0072711",
            "identifier_type": "str",
            "name": "cellular response to hydroxyurea",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0072711",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 5697,
            "identifier": "GO:0015389",
            "identifier_type": "str",
            "name": "pyrimidine- and adenine-specific:sodium symporter activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0015389",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 5698,
            "identifier": "4542",
            "identifier_type": "int",
            "name": "MYO1F",
            "properties": {
                "url": "http://identifiers.org/ncbigene/4542",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "myosin IF"
            },
            "metanode": "Gene"
        },
        {
            "id": 5699,
            "identifier": "GO:0007188",
            "identifier_type": "str",
            "name": "adenylate cyclase-modulating G-protein coupled receptor signaling pathway",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0007188",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 5700,
            "identifier": "GO:0030323",
            "identifier_type": "str",
            "name": "respiratory tube development",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0030323",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 5701,
            "identifier": "93611",
            "identifier_type": "int",
            "name": "FBXO44",
            "properties": {
                "url": "http://identifiers.org/ncbigene/93611",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "F-box protein 44"
            },
            "metanode": "Gene"
        },
        {
            "id": 5702,
            "identifier": "GO:0016093",
            "identifier_type": "str",
            "name": "polyprenol metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0016093",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 5703,
            "identifier": "DB00366",
            "identifier_type": "str",
            "name": "Doxylamine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00366",
                "inchi": "InChI=1S/C17H22N2O/c1-17(20-14-13-19(2)3,15-9-5-4-6-10-15)16-11-7-8-12-18-16/h4-12H,13-14H2,1-3H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=HCFDWZZGGLSKEP-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 5704,
            "identifier": "7123",
            "identifier_type": "int",
            "name": "CLEC3B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/7123",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "C-type lectin domain family 3, member B"
            },
            "metanode": "Gene"
        },
        {
            "id": 5705,
            "identifier": "GO:0098799",
            "identifier_type": "str",
            "name": "outer mitochondrial membrane protein complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0098799",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 5706,
            "identifier": "57017",
            "identifier_type": "int",
            "name": "COQ9",
            "properties": {
                "url": "http://identifiers.org/ncbigene/57017",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "coenzyme Q9"
            },
            "metanode": "Gene"
        },
        {
            "id": 5707,
            "identifier": "245913",
            "identifier_type": "int",
            "name": "DEFB110",
            "properties": {
                "url": "http://identifiers.org/ncbigene/245913",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "defensin, beta 110"
            },
            "metanode": "Gene"
        },
        {
            "id": 5708,
            "identifier": "642273",
            "identifier_type": "int",
            "name": "FAM110C",
            "properties": {
                "url": "http://identifiers.org/ncbigene/642273",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "family with sequence similarity 110, member C"
            },
            "metanode": "Gene"
        },
        {
            "id": 5709,
            "identifier": "25960",
            "identifier_type": "int",
            "name": "ADGRA2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/25960",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "adhesion G protein-coupled receptor A2"
            },
            "metanode": "Gene"
        },
        {
            "id": 5710,
            "identifier": "317662",
            "identifier_type": "int",
            "name": "FAM149B1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/317662",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "family with sequence similarity 149, member B1"
            },
            "metanode": "Gene"
        },
        {
            "id": 5711,
            "identifier": "WP678_r71506",
            "identifier_type": "str",
            "name": "Arachidonate Epoxygenase / Epoxide Hydrolase",
            "properties": {
                "url": "http://www.wikipathways.org/instance/WP678_r71506",
                "source": "WikiPathways",
                "license": "CC BY 3.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 5712,
            "identifier": "GO:0072429",
            "identifier_type": "str",
            "name": "response to intra-S DNA damage checkpoint signaling",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0072429",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 5713,
            "identifier": "DB01141",
            "identifier_type": "str",
            "name": "Micafungin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01141",
                "inchi": "InChI=1S/C56H71N9O23S/c1-4-5-6-17-86-32-14-11-28(12-15-32)39-21-33(63-87-39)27-7-9-29(10-8-27)49(75)58-34-20-38(70)52(78)62-54(80)45-46(72)25(2)23-65(45)56(82)43(37(69)22-41(57)71)60-53(79)44(48(74)47(73)30-13-16-36(68)40(18-30)88-89(83,84)85)61-51(77)35-19-31(67)24-64(35)55(81)42(26(3)66)59-50(34)76/h7-16,18,21,25-26,31,34-35,37-38,42-48,52,66-70,72-74,78H,4-6,17,19-20,22-24H2,1-3H3,(H2,57,71)(H,58,75)(H,59,76)(H,60,79)(H,61,77)(H,62,80)(H,83,84,85)/t25-,26+,31+,34-,35-,37+,38+,42-,43-,44-,45-,46-,47-,48-,52+/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=PIEUQSKUWLMALL-YABMTYFHSA-N"
            },
            "metanode": "Compound"
        }
    ]
}