Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=625

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=650",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=600",
    "results": [
        {
            "id": 623,
            "identifier": "80032",
            "identifier_type": "int",
            "name": "ZNF556",
            "properties": {
                "url": "http://identifiers.org/ncbigene/80032",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "zinc finger protein 556"
            },
            "metanode": "Gene"
        },
        {
            "id": 624,
            "identifier": "GO:0043503",
            "identifier_type": "str",
            "name": "skeletal muscle fiber adaptation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0043503",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 625,
            "identifier": "5277",
            "identifier_type": "int",
            "name": "PIGA",
            "properties": {
                "url": "http://identifiers.org/ncbigene/5277",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "phosphatidylinositol glycan anchor biosynthesis, class A"
            },
            "metanode": "Gene"
        },
        {
            "id": 626,
            "identifier": "51203",
            "identifier_type": "int",
            "name": "NUSAP1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/51203",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "15",
                "description": "nucleolar and spindle associated protein 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 627,
            "identifier": "221322",
            "identifier_type": "int",
            "name": "TBC1D32",
            "properties": {
                "url": "http://identifiers.org/ncbigene/221322",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "TBC1 domain family, member 32"
            },
            "metanode": "Gene"
        },
        {
            "id": 628,
            "identifier": "375057",
            "identifier_type": "int",
            "name": "C1orf95",
            "properties": {
                "url": "http://identifiers.org/ncbigene/375057",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "chromosome 1 open reading frame 95"
            },
            "metanode": "Gene"
        },
        {
            "id": 629,
            "identifier": "GO:0061665",
            "identifier_type": "str",
            "name": "SUMO ligase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0061665",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 630,
            "identifier": "138802",
            "identifier_type": "int",
            "name": "OR13C8",
            "properties": {
                "url": "http://identifiers.org/ncbigene/138802",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "olfactory receptor, family 13, subfamily C, member 8"
            },
            "metanode": "Gene"
        },
        {
            "id": 631,
            "identifier": "GO:0070535",
            "identifier_type": "str",
            "name": "histone H2A K63-linked ubiquitination",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0070535",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 632,
            "identifier": "GO:0005332",
            "identifier_type": "str",
            "name": "gamma-aminobutyric acid:sodium symporter activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0005332",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 633,
            "identifier": "643008",
            "identifier_type": "int",
            "name": "SMIM5",
            "properties": {
                "url": "http://identifiers.org/ncbigene/643008",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "small integral membrane protein 5"
            },
            "metanode": "Gene"
        },
        {
            "id": 634,
            "identifier": "100131195",
            "identifier_type": "int",
            "name": "LOC100131195",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100131195",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "uncharacterized LOC100131195"
            },
            "metanode": "Gene"
        },
        {
            "id": 635,
            "identifier": "6231",
            "identifier_type": "int",
            "name": "RPS26",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6231",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "ribosomal protein S26"
            },
            "metanode": "Gene"
        },
        {
            "id": 636,
            "identifier": "GO:0044254",
            "identifier_type": "str",
            "name": "multicellular organismal protein catabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0044254",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 637,
            "identifier": "79658",
            "identifier_type": "int",
            "name": "ARHGAP10",
            "properties": {
                "url": "http://identifiers.org/ncbigene/79658",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "Rho GTPase activating protein 10"
            },
            "metanode": "Gene"
        },
        {
            "id": 638,
            "identifier": "GO:0000097",
            "identifier_type": "str",
            "name": "sulfur amino acid biosynthetic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0000097",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 639,
            "identifier": "151473",
            "identifier_type": "int",
            "name": "SLC16A14",
            "properties": {
                "url": "http://identifiers.org/ncbigene/151473",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "solute carrier family 16, member 14"
            },
            "metanode": "Gene"
        },
        {
            "id": 640,
            "identifier": "9554",
            "identifier_type": "int",
            "name": "SEC22B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9554",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene)"
            },
            "metanode": "Gene"
        },
        {
            "id": 641,
            "identifier": "DB01078",
            "identifier_type": "str",
            "name": "Deslanoside",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01078",
                "inchi": "InChI=1S/C47H74O19/c1-20-41(64-36-16-30(50)42(21(2)60-36)65-37-17-31(51)43(22(3)61-37)66-44-40(56)39(55)38(54)32(18-48)63-44)29(49)15-35(59-20)62-25-8-10-45(4)24(13-25)6-7-27-28(45)14-33(52)46(5)26(9-11-47(27,46)57)23-12-34(53)58-19-23/h12,20-22,24-33,35-44,48-52,54-57H,6-11,13-19H2,1-5H3/t20-,21-,22-,24-,25+,26-,27-,28+,29+,30+,31+,32-,33-,35+,36+,37+,38-,39+,40-,41-,42-,43-,44+,45+,46+,47+/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=OBATZBGFDSVCJD-LALPQLPRSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 642,
            "identifier": "105370362",
            "identifier_type": "int",
            "name": "LOC105370362",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105370362",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "13",
                "description": "uncharacterized LOC105370362"
            },
            "metanode": "Gene"
        },
        {
            "id": 643,
            "identifier": "390197",
            "identifier_type": "int",
            "name": "OR4D10",
            "properties": {
                "url": "http://identifiers.org/ncbigene/390197",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "olfactory receptor, family 4, subfamily D, member 10"
            },
            "metanode": "Gene"
        },
        {
            "id": 644,
            "identifier": "C0877266",
            "identifier_type": "str",
            "name": "Upper respiratory tract inflammation",
            "properties": {
                "url": "http://identifiers.org/umls/C0877266",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 645,
            "identifier": "GO:0043208",
            "identifier_type": "str",
            "name": "glycosphingolipid binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0043208",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 646,
            "identifier": "GO:0009115",
            "identifier_type": "str",
            "name": "xanthine catabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0009115",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 647,
            "identifier": "GO:0043320",
            "identifier_type": "str",
            "name": "natural killer cell degranulation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0043320",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        }
    ]
}