Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=6300

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=6325",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=6275",
    "results": [
        {
            "id": 6289,
            "identifier": "GO:0035115",
            "identifier_type": "str",
            "name": "embryonic forelimb morphogenesis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0035115",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 6290,
            "identifier": "UBERON:0002407",
            "identifier_type": "str",
            "name": "pericardium",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/UBERON_0002407",
                "bto_id": "BTO:0000717",
                "source": "Uberon",
                "license": "CC BY 3.0",
                "mesh_id": "D010496"
            },
            "metanode": "Anatomy"
        },
        {
            "id": 6291,
            "identifier": "GO:0070528",
            "identifier_type": "str",
            "name": "protein kinase C signaling",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0070528",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 6292,
            "identifier": "150372",
            "identifier_type": "int",
            "name": "NFAM1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/150372",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "22",
                "description": "NFAT activating protein with ITAM motif 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 6293,
            "identifier": "3786",
            "identifier_type": "int",
            "name": "KCNQ3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3786",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "potassium channel, voltage gated KQT-like subfamily Q, member 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 6294,
            "identifier": "GO:0001843",
            "identifier_type": "str",
            "name": "neural tube closure",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0001843",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 6295,
            "identifier": "DB01040",
            "identifier_type": "str",
            "name": "Hydroxystilbamidine Isethionate",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01040",
                "inchi": "InChI=1S/C16H16N4O.2C2H6O4S/c17-15(18)12-5-2-10(3-6-12)1-4-11-7-8-13(16(19)20)9-14(11)21;2*3-1-2-7(4,5)6/h1-9H,17-18H2,(H3,19,20);2*3H,1-2H2,(H,4,5,6)/b11-4-;;",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=VIDDZUWWPMDEHU-LTTFOTGMSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 6296,
            "identifier": "C0151827",
            "identifier_type": "str",
            "name": "Eye pain",
            "properties": {
                "url": "http://identifiers.org/umls/C0151827",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 6297,
            "identifier": "GO:0036488",
            "identifier_type": "str",
            "name": "CHOP-C/EBP complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0036488",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 6298,
            "identifier": "283897",
            "identifier_type": "int",
            "name": "C16orf54",
            "properties": {
                "url": "http://identifiers.org/ncbigene/283897",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "chromosome 16 open reading frame 54"
            },
            "metanode": "Gene"
        },
        {
            "id": 6299,
            "identifier": "2159",
            "identifier_type": "int",
            "name": "F10",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2159",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "13",
                "description": "coagulation factor X"
            },
            "metanode": "Gene"
        },
        {
            "id": 6300,
            "identifier": "10650",
            "identifier_type": "int",
            "name": "SLMO1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/10650",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "18",
                "description": "slowmo homolog 1 (Drosophila)"
            },
            "metanode": "Gene"
        },
        {
            "id": 6301,
            "identifier": "60672",
            "identifier_type": "int",
            "name": "MIIP",
            "properties": {
                "url": "http://identifiers.org/ncbigene/60672",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "migration and invasion inhibitory protein"
            },
            "metanode": "Gene"
        },
        {
            "id": 6302,
            "identifier": "DB00645",
            "identifier_type": "str",
            "name": "Dyclonine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00645",
                "inchi": "InChI=1S/C18H27NO2/c1-2-3-15-21-17-9-7-16(8-10-17)18(20)11-14-19-12-5-4-6-13-19/h7-10H,2-6,11-15H2,1H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=BZEWSEKUUPWQDQ-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 6303,
            "identifier": "C0021655",
            "identifier_type": "str",
            "name": "Insulin resistance",
            "properties": {
                "url": "http://identifiers.org/umls/C0021655",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 6304,
            "identifier": "286238",
            "identifier_type": "int",
            "name": "LOC286238",
            "properties": {
                "url": "http://identifiers.org/ncbigene/286238",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "uncharacterized LOC286238"
            },
            "metanode": "Gene"
        },
        {
            "id": 6305,
            "identifier": "DB01403",
            "identifier_type": "str",
            "name": "Methotrimeprazine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01403",
                "inchi": "InChI=1S/C19H24N2OS/c1-14(12-20(2)3)13-21-16-7-5-6-8-18(16)23-19-10-9-15(22-4)11-17(19)21/h5-11,14H,12-13H2,1-4H3/t14-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=VRQVVMDWGGWHTJ-CQSZACIVSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 6306,
            "identifier": "GO:0003690",
            "identifier_type": "str",
            "name": "double-stranded DNA binding",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0003690",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 6307,
            "identifier": "729447",
            "identifier_type": "int",
            "name": "GAGE2A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/729447",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "G antigen 2A"
            },
            "metanode": "Gene"
        },
        {
            "id": 6308,
            "identifier": "D054068",
            "identifier_type": "str",
            "name": "Livedo Reticularis",
            "properties": {
                "url": "http://identifiers.org/mesh/D054068",
                "source": "MeSH",
                "license": "CC0 1.0"
            },
            "metanode": "Symptom"
        },
        {
            "id": 6309,
            "identifier": "C0241060",
            "identifier_type": "str",
            "name": "Dermal cyst",
            "properties": {
                "url": "http://identifiers.org/umls/C0241060",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 6310,
            "identifier": "138009",
            "identifier_type": "int",
            "name": "DCAF4L2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/138009",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "8",
                "description": "DDB1 and CUL4 associated factor 4-like 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 6311,
            "identifier": "56975",
            "identifier_type": "int",
            "name": "FAM20C",
            "properties": {
                "url": "http://identifiers.org/ncbigene/56975",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "family with sequence similarity 20, member C"
            },
            "metanode": "Gene"
        },
        {
            "id": 6312,
            "identifier": "DB00409",
            "identifier_type": "str",
            "name": "Remoxipride",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00409",
                "inchi": "InChI=1S/C16H23BrN2O3/c1-4-19-9-5-6-11(19)10-18-16(20)14-13(21-2)8-7-12(17)15(14)22-3/h7-8,11H,4-6,9-10H2,1-3H3,(H,18,20)/t11-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=GUJRSXAPGDDABA-NSHDSACASA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 6313,
            "identifier": "GO:0097285",
            "identifier_type": "str",
            "name": "cell-type specific apoptotic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0097285",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        }
    ]
}