Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=6600

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=6625",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=6575",
    "results": [
        {
            "id": 6589,
            "identifier": "4591",
            "identifier_type": "int",
            "name": "TRIM37",
            "properties": {
                "url": "http://identifiers.org/ncbigene/4591",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "tripartite motif containing 37"
            },
            "metanode": "Gene"
        },
        {
            "id": 6590,
            "identifier": "DB01591",
            "identifier_type": "str",
            "name": "Solifenacin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01591",
                "inchi": "InChI=1S/C23H26N2O2.C4H6O4/c26-23(27-21-16-24-13-10-18(21)11-14-24)25-15-12-17-6-4-5-9-20(17)22(25)19-7-2-1-3-8-19;5-3(6)1-2-4(7)8/h1-9,18,21-22H,10-16H2;1-2H2,(H,5,6)(H,7,8)/t21-,22-;/m0./s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=RXZMMZZRUPYENV-VROPFNGYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 6591,
            "identifier": "84897",
            "identifier_type": "int",
            "name": "TBRG1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/84897",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "transforming growth factor beta regulator 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 6592,
            "identifier": "PC7_2925",
            "identifier_type": "str",
            "name": "DAP12 interactions",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 6593,
            "identifier": "GO:0060384",
            "identifier_type": "str",
            "name": "innervation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0060384",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 6594,
            "identifier": "DB01331",
            "identifier_type": "str",
            "name": "Cefoxitin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01331",
                "inchi": "InChI=1S/C16H17N3O7S2/c1-25-16(18-10(20)5-9-3-2-4-27-9)13(23)19-11(12(21)22)8(6-26-15(17)24)7-28-14(16)19/h2-4,14H,5-7H2,1H3,(H2,17,24)(H,18,20)(H,21,22)/t14-,16+/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=WZOZEZRFJCJXNZ-ZBFHGGJFSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 6595,
            "identifier": "6916",
            "identifier_type": "int",
            "name": "TBXAS1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6916",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "thromboxane A synthase 1 (platelet)"
            },
            "metanode": "Gene"
        },
        {
            "id": 6596,
            "identifier": "C0521991",
            "identifier_type": "str",
            "name": "Stress symptoms",
            "properties": {
                "url": "http://identifiers.org/umls/C0521991",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 6597,
            "identifier": "C0039496",
            "identifier_type": "str",
            "name": "Temporomandibular joint syndrome",
            "properties": {
                "url": "http://identifiers.org/umls/C0039496",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 6598,
            "identifier": "126541",
            "identifier_type": "int",
            "name": "OR10H4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/126541",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "olfactory receptor, family 10, subfamily H, member 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 6599,
            "identifier": "DB00315",
            "identifier_type": "str",
            "name": "Zolmitriptan",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00315",
                "inchi": "InChI=1S/C16H21N3O2/c1-19(2)6-5-12-9-17-15-4-3-11(8-14(12)15)7-13-10-21-16(20)18-13/h3-4,8-9,13,17H,5-7,10H2,1-2H3,(H,18,20)/t13-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=ULSDMUVEXKOYBU-ZDUSSCGKSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 6600,
            "identifier": "1748",
            "identifier_type": "int",
            "name": "DLX4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1748",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "distal-less homeobox 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 6601,
            "identifier": "55311",
            "identifier_type": "int",
            "name": "ZNF444",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55311",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "zinc finger protein 444"
            },
            "metanode": "Gene"
        },
        {
            "id": 6602,
            "identifier": "DOID:1612",
            "identifier_type": "str",
            "name": "breast cancer",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/DOID_1612",
                "source": "Disease Ontology",
                "license": "CC BY 3.0"
            },
            "metanode": "Disease"
        },
        {
            "id": 6603,
            "identifier": "N0000182137",
            "identifier_type": "str",
            "name": "Cytochrome P450 2D6 Inhibitors",
            "properties": {
                "url": "http://purl.bioontology.org/ontology/NDFRT/N0000182137",
                "source": "FDA via DrugCentral",
                "license": "CC BY 4.0",
                "class_type": "Mechanism of Action"
            },
            "metanode": "Pharmacologic Class"
        },
        {
            "id": 6604,
            "identifier": "341116",
            "identifier_type": "int",
            "name": "MS4A10",
            "properties": {
                "url": "http://identifiers.org/ncbigene/341116",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "membrane-spanning 4-domains, subfamily A, member 10"
            },
            "metanode": "Gene"
        },
        {
            "id": 6605,
            "identifier": "105371063",
            "identifier_type": "int",
            "name": "LOC105371063",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105371063",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "putative uncharacterized protein encoded by LINC00596"
            },
            "metanode": "Gene"
        },
        {
            "id": 6606,
            "identifier": "653282",
            "identifier_type": "int",
            "name": "CT47A7",
            "properties": {
                "url": "http://identifiers.org/ncbigene/653282",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "cancer/testis antigen family 47, member A7"
            },
            "metanode": "Gene"
        },
        {
            "id": 6607,
            "identifier": "164",
            "identifier_type": "int",
            "name": "AP1G1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/164",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "adaptor-related protein complex 1, gamma 1 subunit"
            },
            "metanode": "Gene"
        },
        {
            "id": 6608,
            "identifier": "GO:0002141",
            "identifier_type": "str",
            "name": "stereocilia ankle link",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0002141",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 6609,
            "identifier": "105",
            "identifier_type": "int",
            "name": "ADARB2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/105",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "10",
                "description": "adenosine deaminase, RNA-specific, B2 (non-functional)"
            },
            "metanode": "Gene"
        },
        {
            "id": 6610,
            "identifier": "8612",
            "identifier_type": "int",
            "name": "PPAP2C",
            "properties": {
                "url": "http://identifiers.org/ncbigene/8612",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "phosphatidic acid phosphatase type 2C"
            },
            "metanode": "Gene"
        },
        {
            "id": 6611,
            "identifier": "574431",
            "identifier_type": "int",
            "name": "C1orf147",
            "properties": {
                "url": "http://identifiers.org/ncbigene/574431",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "chromosome 1 open reading frame 147"
            },
            "metanode": "Gene"
        },
        {
            "id": 6612,
            "identifier": "GO:1901342",
            "identifier_type": "str",
            "name": "regulation of vasculature development",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1901342",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 6613,
            "identifier": "389383",
            "identifier_type": "int",
            "name": "CLPSL2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/389383",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "colipase-like 2"
            },
            "metanode": "Gene"
        }
    ]
}