Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=8100

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=8125",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=8075",
    "results": [
        {
            "id": 8088,
            "identifier": "C1457883",
            "identifier_type": "str",
            "name": "Aggressive reaction",
            "properties": {
                "url": "http://identifiers.org/umls/C1457883",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 8089,
            "identifier": "GO:2000505",
            "identifier_type": "str",
            "name": "regulation of energy homeostasis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_2000505",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 8090,
            "identifier": "GO:0050904",
            "identifier_type": "str",
            "name": "diapedesis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0050904",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 8091,
            "identifier": "C0003504",
            "identifier_type": "str",
            "name": "Aortic valve incompetence",
            "properties": {
                "url": "http://identifiers.org/umls/C0003504",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 8092,
            "identifier": "1478",
            "identifier_type": "int",
            "name": "CSTF2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1478",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa"
            },
            "metanode": "Gene"
        },
        {
            "id": 8093,
            "identifier": "WP474_r80208",
            "identifier_type": "str",
            "name": "Endochondral Ossification",
            "properties": {
                "url": "http://www.wikipathways.org/instance/WP474_r80208",
                "source": "WikiPathways",
                "license": "CC BY 3.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 8094,
            "identifier": "DB00560",
            "identifier_type": "str",
            "name": "Tigecycline",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00560",
                "inchi": "InChI=1S/C29H39N5O8/c1-28(2,3)31-11-17(35)32-15-10-16(33(4)5)13-8-12-9-14-21(34(6)7)24(38)20(27(30)41)26(40)29(14,42)25(39)18(12)23(37)19(13)22(15)36/h10,12,14,21,31,36,38-39,42H,8-9,11H2,1-7H3,(H2,30,41)(H,32,35)/t12-,14-,21-,29-/m0/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=FPZLLRFZJZRHSY-HJYUBDRYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 8095,
            "identifier": "GO:0016477",
            "identifier_type": "str",
            "name": "cell migration",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0016477",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 8096,
            "identifier": "GO:0031646",
            "identifier_type": "str",
            "name": "positive regulation of neurological system process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0031646",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 8097,
            "identifier": "DB00123",
            "identifier_type": "str",
            "name": "L-Lysine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00123",
                "inchi": "InChI=1/C6H14N2O2/c7-4-2-1-3-5(8)6(9)10/h5H,1-4,7-8H2,(H,9,10)/t5-/s2",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=KDXKERNSBIXSRK-MLHKIVSYNA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 8098,
            "identifier": "GO:0046149",
            "identifier_type": "str",
            "name": "pigment catabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0046149",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 8099,
            "identifier": "3931",
            "identifier_type": "int",
            "name": "LCAT",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3931",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "lecithin-cholesterol acyltransferase"
            },
            "metanode": "Gene"
        },
        {
            "id": 8100,
            "identifier": "8342",
            "identifier_type": "int",
            "name": "HIST1H2BM",
            "properties": {
                "url": "http://identifiers.org/ncbigene/8342",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "histone cluster 1, H2bm"
            },
            "metanode": "Gene"
        },
        {
            "id": 8101,
            "identifier": "58492",
            "identifier_type": "int",
            "name": "ZNF77",
            "properties": {
                "url": "http://identifiers.org/ncbigene/58492",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "zinc finger protein 77"
            },
            "metanode": "Gene"
        },
        {
            "id": 8102,
            "identifier": "81027",
            "identifier_type": "int",
            "name": "TUBB1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/81027",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "20",
                "description": "tubulin, beta 1 class VI"
            },
            "metanode": "Gene"
        },
        {
            "id": 8103,
            "identifier": "GO:0042819",
            "identifier_type": "str",
            "name": "vitamin B6 biosynthetic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0042819",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 8104,
            "identifier": "C0235475",
            "identifier_type": "str",
            "name": "Electrocardiogram QRS complex prolonged",
            "properties": {
                "url": "http://identifiers.org/umls/C0235475",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 8105,
            "identifier": "2288",
            "identifier_type": "int",
            "name": "FKBP4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2288",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "FK506 binding protein 4, 59kDa"
            },
            "metanode": "Gene"
        },
        {
            "id": 8106,
            "identifier": "PC7_7483",
            "identifier_type": "str",
            "name": "Signaling by WNT in cancer",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 8107,
            "identifier": "C0459435",
            "identifier_type": "str",
            "name": "Psychotic state",
            "properties": {
                "url": "http://identifiers.org/umls/C0459435",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 8108,
            "identifier": "DB01127",
            "identifier_type": "str",
            "name": "Econazole",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01127",
                "inchi": "InChI=1S/C18H15Cl3N2O/c19-14-3-1-13(2-4-14)11-24-18(10-23-8-7-22-12-23)16-6-5-15(20)9-17(16)21/h1-9,12,18H,10-11H2",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=LEZWWPYKPKIXLL-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 8109,
            "identifier": "91373",
            "identifier_type": "int",
            "name": "UAP1L1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/91373",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "9",
                "description": "UDP-N-acetylglucosamine pyrophosphorylase 1 like 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 8110,
            "identifier": "100128851",
            "identifier_type": "int",
            "name": "LOC100128851",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100128851",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "uncharacterized LOC100128851"
            },
            "metanode": "Gene"
        },
        {
            "id": 8111,
            "identifier": "GO:0005758",
            "identifier_type": "str",
            "name": "mitochondrial intermembrane space",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0005758",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 8112,
            "identifier": "C0152018",
            "identifier_type": "str",
            "name": "Oesophageal carcinoma",
            "properties": {
                "url": "http://identifiers.org/umls/C0152018",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        }
    ]
}