Node
Return nodes, sorted by similarity to the search term.
Use search=<str>
to search identifier
for prefix match, and name
for substring and trigram searches (similarity defaults to 0.3);
Use search=<str>&similarity=<value>
to set your own similarity
value in the range of (0, 1.0].
Set similarity=1.0
to exclude trigram search.
Filter for select metanodes using metanodes=<str>
, where <str>
is a comma-separated list of metanode abbreviations.
For example, metanodes=C,D
will restrict to Compound and Disease nodes.
Set other-node=<node_id>
to return non-null values for metapath_count
.
metapath_counts
measures the number of metapaths stored in the database between the result node and other node.
If search
and other-node
and both specified, results are sorted by search similarity and results with metapath_count == 0
are returned.
If other-node
is specified but not search
, results are sorted by metapath_count
(descending) and only results with metapath_count > 0
are returned.
GET /v1/nodes/?format=api&offset=825
http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=850", "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=800", "results": [ { "id": 824, "identifier": "GO:0031013", "identifier_type": "str", "name": "troponin I binding", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0031013", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" }, { "id": 825, "identifier": "1434", "identifier_type": "int", "name": "CSE1L", "properties": { "url": "http://identifiers.org/ncbigene/1434", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "20", "description": "CSE1 chromosome segregation 1-like (yeast)" }, "metanode": "Gene" }, { "id": 826, "identifier": "C1696704", "identifier_type": "str", "name": "Ovarian haemorrhage", "properties": { "url": "http://identifiers.org/umls/C1696704", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 827, "identifier": "GO:0030621", "identifier_type": "str", "name": "U4 snRNA binding", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0030621", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" }, { "id": 828, "identifier": "GO:0035090", "identifier_type": "str", "name": "maintenance of apical/basal cell polarity", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0035090", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 829, "identifier": "C0003028", "identifier_type": "str", "name": "Anhidrosis", "properties": { "url": "http://identifiers.org/umls/C0003028", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 830, "identifier": "GO:0031965", "identifier_type": "str", "name": "nuclear membrane", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0031965", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Cellular Component" }, { "id": 831, "identifier": "80314", "identifier_type": "int", "name": "EPC1", "properties": { "url": "http://identifiers.org/ncbigene/80314", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "10", "description": "enhancer of polycomb homolog 1 (Drosophila)" }, "metanode": "Gene" }, { "id": 832, "identifier": "100507483", "identifier_type": "int", "name": "LOC100507483", "properties": { "url": "http://identifiers.org/ncbigene/100507483", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "19", "description": "uncharacterized LOC100507483" }, "metanode": "Gene" }, { "id": 833, "identifier": "DB01553", "identifier_type": "str", "name": "Cloxazolam", "properties": { "url": "http://www.drugbank.ca/drugs/DB01553", "inchi": "InChI=1S/C17H14Cl2N2O2/c18-11-5-6-15-13(9-11)17(12-3-1-2-4-14(12)19)21(7-8-23-17)10-16(22)20-15/h1-6,9H,7-8,10H2,(H,20,22)", "source": "DrugBank", "license": "CC BY-NC 4.0", "inchikey": "InChIKey=ZIXNZOBDFKSQTC-UHFFFAOYSA-N" }, "metanode": "Compound" }, { "id": 834, "identifier": "GO:0001915", "identifier_type": "str", "name": "negative regulation of T cell mediated cytotoxicity", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0001915", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 835, "identifier": "GO:0019724", "identifier_type": "str", "name": "B cell mediated immunity", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0019724", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 836, "identifier": "23654", "identifier_type": "int", "name": "PLXNB2", "properties": { "url": "http://identifiers.org/ncbigene/23654", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "22", "description": "plexin B2" }, "metanode": "Gene" }, { "id": 837, "identifier": "139212", "identifier_type": "int", "name": "PIH1D3", "properties": { "url": "http://identifiers.org/ncbigene/139212", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "X", "description": "PIH1 domain containing 3" }, "metanode": "Gene" }, { "id": 838, "identifier": "10867", "identifier_type": "int", "name": "TSPAN9", "properties": { "url": "http://identifiers.org/ncbigene/10867", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "12", "description": "tetraspanin 9" }, "metanode": "Gene" }, { "id": 839, "identifier": "53938", "identifier_type": "int", "name": "PPIL3", "properties": { "url": "http://identifiers.org/ncbigene/53938", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "2", "description": "peptidylprolyl isomerase (cyclophilin)-like 3" }, "metanode": "Gene" }, { "id": 840, "identifier": "C0151936", "identifier_type": "str", "name": "Tendon disorder", "properties": { "url": "http://identifiers.org/umls/C0151936", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 841, "identifier": "C0001206", "identifier_type": "str", "name": "Acromegaly", "properties": { "url": "http://identifiers.org/umls/C0001206", "source": "UMLS via SIDER 4.1", "license": "CC BY-NC-SA 4.0" }, "metanode": "Side Effect" }, { "id": 842, "identifier": "84366", "identifier_type": "int", "name": "PRAC1", "properties": { "url": "http://identifiers.org/ncbigene/84366", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "17", "description": "prostate cancer susceptibility candidate 1" }, "metanode": "Gene" }, { "id": 843, "identifier": "GO:0007015", "identifier_type": "str", "name": "actin filament organization", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0007015", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 844, "identifier": "388569", "identifier_type": "int", "name": "ZNF324B", "properties": { "url": "http://identifiers.org/ncbigene/388569", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "19", "description": "zinc finger protein 324B" }, "metanode": "Gene" }, { "id": 845, "identifier": "6497", "identifier_type": "int", "name": "SKI", "properties": { "url": "http://identifiers.org/ncbigene/6497", "source": "Entrez Gene", "license": "CC0 1.0", "chromosome": "1", "description": "SKI proto-oncogene" }, "metanode": "Gene" }, { "id": 846, "identifier": "GO:0009227", "identifier_type": "str", "name": "nucleotide-sugar catabolic process", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0009227", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Biological Process" }, { "id": 847, "identifier": "PC7_6941", "identifier_type": "str", "name": "Resolution of Sister Chromatid Cohesion", "properties": { "source": "Reactome via Pathway Commons", "license": "CC BY 4.0" }, "metanode": "Pathway" }, { "id": 848, "identifier": "GO:0046527", "identifier_type": "str", "name": "glucosyltransferase activity", "properties": { "url": "http://purl.obolibrary.org/obo/GO_0046527", "source": "Gene Ontology", "license": "CC BY 4.0" }, "metanode": "Molecular Function" } ] }{ "count": 47031, "next": "