Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=8650

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=8675",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=8625",
    "results": [
        {
            "id": 8641,
            "identifier": "UBERON:0002134",
            "identifier_type": "str",
            "name": "tricuspid valve",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/UBERON_0002134",
                "source": "Uberon",
                "license": "CC BY 3.0",
                "mesh_id": "D014261"
            },
            "metanode": "Anatomy"
        },
        {
            "id": 8642,
            "identifier": "2549",
            "identifier_type": "int",
            "name": "GAB1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2549",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "GRB2-associated binding protein 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 8643,
            "identifier": "11040",
            "identifier_type": "int",
            "name": "PIM2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/11040",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "Pim-2 proto-oncogene, serine/threonine kinase"
            },
            "metanode": "Gene"
        },
        {
            "id": 8644,
            "identifier": "DOID:5408",
            "identifier_type": "str",
            "name": "Paget's disease of bone",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/DOID_5408",
                "source": "Disease Ontology",
                "license": "CC BY 3.0"
            },
            "metanode": "Disease"
        },
        {
            "id": 8645,
            "identifier": "GO:0030021",
            "identifier_type": "str",
            "name": "extracellular matrix structural constituent conferring compression resistance",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0030021",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 8646,
            "identifier": "PC7_7500",
            "identifier_type": "str",
            "name": "Signaling mediated by p38-alpha and p38-beta",
            "properties": {
                "source": "PID via Pathway Commons",
                "license": "CC0 1.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 8647,
            "identifier": "C0854286",
            "identifier_type": "str",
            "name": "Eyelid function disorder",
            "properties": {
                "url": "http://identifiers.org/umls/C0854286",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 8648,
            "identifier": "GO:0015923",
            "identifier_type": "str",
            "name": "mannosidase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0015923",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 8649,
            "identifier": "135946",
            "identifier_type": "int",
            "name": "OR6B1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/135946",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "olfactory receptor, family 6, subfamily B, member 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 8650,
            "identifier": "55024",
            "identifier_type": "int",
            "name": "BANK1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55024",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "4",
                "description": "B-cell scaffold protein with ankyrin repeats 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 8651,
            "identifier": "DB08604",
            "identifier_type": "str",
            "name": "Triclosan",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB08604",
                "inchi": "InChI=1S/C12H7Cl3O2/c13-7-1-3-11(9(15)5-7)17-12-4-2-8(14)6-10(12)16/h1-6,16H",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=XEFQLINVKFYRCS-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 8652,
            "identifier": "C0546959",
            "identifier_type": "str",
            "name": "Atrial tachycardia",
            "properties": {
                "url": "http://identifiers.org/umls/C0546959",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 8653,
            "identifier": "GO:0005086",
            "identifier_type": "str",
            "name": "ARF guanyl-nucleotide exchange factor activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0005086",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 8654,
            "identifier": "PC7_3884",
            "identifier_type": "str",
            "name": "Fc epsilon receptor (FCERI) signaling",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 8655,
            "identifier": "7343",
            "identifier_type": "int",
            "name": "UBTF",
            "properties": {
                "url": "http://identifiers.org/ncbigene/7343",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "17",
                "description": "upstream binding transcription factor, RNA polymerase I"
            },
            "metanode": "Gene"
        },
        {
            "id": 8656,
            "identifier": "282617",
            "identifier_type": "int",
            "name": "IFNL3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/282617",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "interferon, lambda 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 8657,
            "identifier": "GO:0051966",
            "identifier_type": "str",
            "name": "regulation of synaptic transmission, glutamatergic",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0051966",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 8658,
            "identifier": "GO:0046532",
            "identifier_type": "str",
            "name": "regulation of photoreceptor cell differentiation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0046532",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 8659,
            "identifier": "N0000009456",
            "identifier_type": "str",
            "name": "Increased Norepinephrine Activity",
            "properties": {
                "url": "http://purl.bioontology.org/ontology/NDFRT/N0000009456",
                "source": "FDA via DrugCentral",
                "license": "CC BY 4.0",
                "class_type": "Physiologic Effect"
            },
            "metanode": "Pharmacologic Class"
        },
        {
            "id": 8660,
            "identifier": "GO:0007219",
            "identifier_type": "str",
            "name": "Notch signaling pathway",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0007219",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 8661,
            "identifier": "GO:0002051",
            "identifier_type": "str",
            "name": "osteoblast fate commitment",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0002051",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 8662,
            "identifier": "DB00407",
            "identifier_type": "str",
            "name": "Ardeparin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00407",
                "inchi": "InChI=1S/C26H42N2O37S5/c1-4(30)27-7-9(31)13(6(56-23(7)39)3-55-67(43,44)45)58-26-19(65-70(52,53)54)12(34)16(20(62-26)22(37)38)60-24-8(28-66(40,41)42)15(63-68(46,47)48)14(5(2-29)57-24)59-25-18(64-69(49,50)51)11(33)10(32)17(61-25)21(35)36/h5-20,23-26,28-29,31-34,39H,2-3H2,1H3,(H,27,30)(H,35,36)(H,37,38)(H,40,41,42)(H,43,44,45)(H,46,47,48)(H,49,50,51)(H,52,53,54)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=HTTJABKRGRZYRN-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 8663,
            "identifier": "C0268407",
            "identifier_type": "str",
            "name": "Cardiac amyloidosis",
            "properties": {
                "url": "http://identifiers.org/umls/C0268407",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 8664,
            "identifier": "GO:2001109",
            "identifier_type": "str",
            "name": "regulation of lens epithelial cell proliferation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_2001109",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 8665,
            "identifier": "9167",
            "identifier_type": "int",
            "name": "COX7A2L",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9167",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "cytochrome c oxidase subunit VIIa polypeptide 2 like"
            },
            "metanode": "Gene"
        }
    ]
}