Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=8800

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=8825",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=8775",
    "results": [
        {
            "id": 8791,
            "identifier": "3006",
            "identifier_type": "int",
            "name": "HIST1H1C",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3006",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "histone cluster 1, H1c"
            },
            "metanode": "Gene"
        },
        {
            "id": 8792,
            "identifier": "GO:0050428",
            "identifier_type": "str",
            "name": "3'-phosphoadenosine 5'-phosphosulfate biosynthetic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0050428",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 8793,
            "identifier": "57695",
            "identifier_type": "int",
            "name": "USP37",
            "properties": {
                "url": "http://identifiers.org/ncbigene/57695",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "ubiquitin specific peptidase 37"
            },
            "metanode": "Gene"
        },
        {
            "id": 8794,
            "identifier": "GO:0060931",
            "identifier_type": "str",
            "name": "sinoatrial node cell development",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0060931",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 8795,
            "identifier": "GO:0042069",
            "identifier_type": "str",
            "name": "regulation of catecholamine metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0042069",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 8796,
            "identifier": "100144595",
            "identifier_type": "int",
            "name": "LOC100144595",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100144595",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "2",
                "description": "uncharacterized LOC100144595"
            },
            "metanode": "Gene"
        },
        {
            "id": 8797,
            "identifier": "DB00680",
            "identifier_type": "str",
            "name": "Moricizine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00680",
                "inchi": "InChI=1S/C22H25N3O4S/c1-2-29-22(27)23-16-7-8-20-18(15-16)25(17-5-3-4-6-19(17)30-20)21(26)9-10-24-11-13-28-14-12-24/h3-8,15H,2,9-14H2,1H3,(H,23,27)",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=FUBVWMNBEHXPSU-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 8798,
            "identifier": "GO:0070900",
            "identifier_type": "str",
            "name": "mitochondrial tRNA modification",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0070900",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 8799,
            "identifier": "C0232267",
            "identifier_type": "str",
            "name": "Pericardial rub",
            "properties": {
                "url": "http://identifiers.org/umls/C0232267",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 8800,
            "identifier": "GO:0070100",
            "identifier_type": "str",
            "name": "negative regulation of chemokine-mediated signaling pathway",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0070100",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 8801,
            "identifier": "C0026985",
            "identifier_type": "str",
            "name": "Myelodysplasia",
            "properties": {
                "url": "http://identifiers.org/umls/C0026985",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 8802,
            "identifier": "GO:0032798",
            "identifier_type": "str",
            "name": "Swi5-Sfr1 complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0032798",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 8803,
            "identifier": "23426",
            "identifier_type": "int",
            "name": "GRIP1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/23426",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "glutamate receptor interacting protein 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 8804,
            "identifier": "GO:0035668",
            "identifier_type": "str",
            "name": "TRAM-dependent toll-like receptor signaling pathway",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0035668",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 8805,
            "identifier": "84266",
            "identifier_type": "int",
            "name": "ALKBH7",
            "properties": {
                "url": "http://identifiers.org/ncbigene/84266",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "19",
                "description": "alkB, alkylation repair homolog 7 (E. coli)"
            },
            "metanode": "Gene"
        },
        {
            "id": 8806,
            "identifier": "C0029944",
            "identifier_type": "str",
            "name": "Overdose",
            "properties": {
                "url": "http://identifiers.org/umls/C0029944",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 8807,
            "identifier": "GO:0005787",
            "identifier_type": "str",
            "name": "signal peptidase complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0005787",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 8808,
            "identifier": "6285",
            "identifier_type": "int",
            "name": "S100B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6285",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "21",
                "description": "S100 calcium binding protein B"
            },
            "metanode": "Gene"
        },
        {
            "id": 8809,
            "identifier": "C0152169",
            "identifier_type": "str",
            "name": "Renal colic",
            "properties": {
                "url": "http://identifiers.org/umls/C0152169",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 8810,
            "identifier": "D014313",
            "identifier_type": "str",
            "name": "Trismus",
            "properties": {
                "url": "http://identifiers.org/mesh/D014313",
                "source": "MeSH",
                "license": "CC0 1.0"
            },
            "metanode": "Symptom"
        },
        {
            "id": 8811,
            "identifier": "C0575805",
            "identifier_type": "str",
            "name": "Hand swelling",
            "properties": {
                "url": "http://identifiers.org/umls/C0575805",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 8812,
            "identifier": "DB00768",
            "identifier_type": "str",
            "name": "Olopatadine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00768",
                "inchi": "InChI=1S/C21H23NO3/c1-22(2)11-5-8-18-17-7-4-3-6-16(17)14-25-20-10-9-15(12-19(18)20)13-21(23)24/h3-4,6-10,12H,5,11,13-14H2,1-2H3,(H,23,24)/b18-8-",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=JBIMVDZLSHOPLA-LSCVHKIXSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 8813,
            "identifier": "DB01268",
            "identifier_type": "str",
            "name": "Sunitinib",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01268",
                "inchi": "InChI=1S/C22H27FN4O2/c1-5-27(6-2)10-9-24-22(29)20-13(3)19(25-14(20)4)12-17-16-11-15(23)7-8-18(16)26-21(17)28/h7-8,11-12,25H,5-6,9-10H2,1-4H3,(H,24,29)(H,26,28)/b17-12-",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=WINHZLLDWRZWRT-ATVHPVEESA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 8814,
            "identifier": "1117",
            "identifier_type": "int",
            "name": "CHI3L2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/1117",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "chitinase 3-like 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 8815,
            "identifier": "140680",
            "identifier_type": "int",
            "name": "C20orf96",
            "properties": {
                "url": "http://identifiers.org/ncbigene/140680",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "20",
                "description": "chromosome 20 open reading frame 96"
            },
            "metanode": "Gene"
        }
    ]
}