Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=9725

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=9750",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=9700",
    "results": [
        {
            "id": 9713,
            "identifier": "219293",
            "identifier_type": "int",
            "name": "ATAD3C",
            "properties": {
                "url": "http://identifiers.org/ncbigene/219293",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "ATPase family, AAA domain containing 3C"
            },
            "metanode": "Gene"
        },
        {
            "id": 9714,
            "identifier": "C0001418",
            "identifier_type": "str",
            "name": "Adenocarcinoma",
            "properties": {
                "url": "http://identifiers.org/umls/C0001418",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 9715,
            "identifier": "2475",
            "identifier_type": "int",
            "name": "MTOR",
            "properties": {
                "url": "http://identifiers.org/ncbigene/2475",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "mechanistic target of rapamycin (serine/threonine kinase)"
            },
            "metanode": "Gene"
        },
        {
            "id": 9716,
            "identifier": "11238",
            "identifier_type": "int",
            "name": "CA5B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/11238",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "carbonic anhydrase VB, mitochondrial"
            },
            "metanode": "Gene"
        },
        {
            "id": 9717,
            "identifier": "GO:0051998",
            "identifier_type": "str",
            "name": "protein carboxyl O-methyltransferase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0051998",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 9718,
            "identifier": "91544",
            "identifier_type": "int",
            "name": "UBXN11",
            "properties": {
                "url": "http://identifiers.org/ncbigene/91544",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "1",
                "description": "UBX domain protein 11"
            },
            "metanode": "Gene"
        },
        {
            "id": 9719,
            "identifier": "C0235895",
            "identifier_type": "str",
            "name": "Implantation complication",
            "properties": {
                "url": "http://identifiers.org/umls/C0235895",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 9720,
            "identifier": "GO:0051877",
            "identifier_type": "str",
            "name": "pigment granule aggregation in cell center",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0051877",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 9721,
            "identifier": "C0151640",
            "identifier_type": "str",
            "name": "Fertility male decreased",
            "properties": {
                "url": "http://identifiers.org/umls/C0151640",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 9722,
            "identifier": "GO:0071801",
            "identifier_type": "str",
            "name": "regulation of podosome assembly",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0071801",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 9723,
            "identifier": "GO:0042825",
            "identifier_type": "str",
            "name": "TAP complex",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0042825",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 9724,
            "identifier": "85378",
            "identifier_type": "int",
            "name": "TUBGCP6",
            "properties": {
                "url": "http://identifiers.org/ncbigene/85378",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "22",
                "description": "tubulin, gamma complex associated protein 6"
            },
            "metanode": "Gene"
        },
        {
            "id": 9725,
            "identifier": "DB01614",
            "identifier_type": "str",
            "name": "Acepromazine",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB01614",
                "inchi": "InChI=1S/C19H22N2OS/c1-14(22)15-9-10-19-17(13-15)21(12-6-11-20(2)3)16-7-4-5-8-18(16)23-19/h4-5,7-10,13H,6,11-12H2,1-3H3",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=NOSIYYJFMPDDSA-UHFFFAOYSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 9726,
            "identifier": "DB00390",
            "identifier_type": "str",
            "name": "Digoxin",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB00390",
                "inchi": "InChI=1S/C41H64O14/c1-19-36(47)28(42)15-34(50-19)54-38-21(3)52-35(17-30(38)44)55-37-20(2)51-33(16-29(37)43)53-24-8-10-39(4)23(13-24)6-7-26-27(39)14-31(45)40(5)25(9-11-41(26,40)48)22-12-32(46)49-18-22/h12,19-21,23-31,33-38,42-45,47-48H,6-11,13-18H2,1-5H3/t19-,20-,21-,23-,24+,25-,26-,27+,28+,29+,30+,31-,33+,34+,35+,36-,37-,38-,39+,40+,41+/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=LTMHDMANZUZIPE-PUGKRICDSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 9727,
            "identifier": "GO:1902714",
            "identifier_type": "str",
            "name": "negative regulation of interferon-gamma secretion",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_1902714",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 9728,
            "identifier": "WP2916_r79908",
            "identifier_type": "str",
            "name": "Interactome of polycomb repressive complex 2 (PRC2) ",
            "properties": {
                "url": "http://www.wikipathways.org/instance/WP2916_r79908",
                "source": "WikiPathways",
                "license": "CC BY 3.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 9729,
            "identifier": "GO:0052739",
            "identifier_type": "str",
            "name": "phosphatidylserine 1-acylhydrolase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0052739",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 9730,
            "identifier": "GO:2000630",
            "identifier_type": "str",
            "name": "positive regulation of miRNA metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_2000630",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 9731,
            "identifier": "7052",
            "identifier_type": "int",
            "name": "TGM2",
            "properties": {
                "url": "http://identifiers.org/ncbigene/7052",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "20",
                "description": "transglutaminase 2"
            },
            "metanode": "Gene"
        },
        {
            "id": 9732,
            "identifier": "GO:0030057",
            "identifier_type": "str",
            "name": "desmosome",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0030057",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Cellular Component"
        },
        {
            "id": 9733,
            "identifier": "C1261473",
            "identifier_type": "str",
            "name": "Sarcoma",
            "properties": {
                "url": "http://identifiers.org/umls/C1261473",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 9734,
            "identifier": "100287823",
            "identifier_type": "int",
            "name": "LOC100287823",
            "properties": {
                "url": "http://identifiers.org/ncbigene/100287823",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "14",
                "description": "double homeobox protein 4-like protein 4"
            },
            "metanode": "Gene"
        },
        {
            "id": 9735,
            "identifier": "55904",
            "identifier_type": "int",
            "name": "KMT2E",
            "properties": {
                "url": "http://identifiers.org/ncbigene/55904",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "7",
                "description": "lysine (K)-specific methyltransferase 2E"
            },
            "metanode": "Gene"
        },
        {
            "id": 9736,
            "identifier": "64411",
            "identifier_type": "int",
            "name": "ARAP3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/64411",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 9737,
            "identifier": "GO:0051573",
            "identifier_type": "str",
            "name": "negative regulation of histone H3-K9 methylation",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0051573",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        }
    ]
}