Node – Django REST framework

Return nodes, sorted by similarity to the search term. Use search=<str> to search identifier for prefix match, and name for substring and trigram searches (similarity defaults to 0.3); Use search=<str>&similarity=<value> to set your own similarity value in the range of (0, 1.0]. Set similarity=1.0 to exclude trigram search. Filter for select metanodes using metanodes=<str>, where <str> is a comma-separated list of metanode abbreviations. For example, metanodes=C,D will restrict to Compound and Disease nodes.

Set other-node=<node_id> to return non-null values for metapath_count. metapath_counts measures the number of metapaths stored in the database between the result node and other node. If search and other-node and both specified, results are sorted by search similarity and results with metapath_count == 0 are returned. If other-node is specified but not search, results are sorted by metapath_count (descending) and only results with metapath_count > 0 are returned.

GET /v1/nodes/?format=api&offset=9750

HTTP 200 OK
Allow: GET
Content-Type: application/json
Vary: Accept

{
    "count": 47031,
    "next": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=9775",
    "previous": "http://search-api.het.io/v1/nodes/?format=api&limit=25&offset=9725",
    "results": [
        {
            "id": 9738,
            "identifier": "C0235398",
            "identifier_type": "str",
            "name": "Diabetes mellitus exacerbated",
            "properties": {
                "url": "http://identifiers.org/umls/C0235398",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 9739,
            "identifier": "586",
            "identifier_type": "int",
            "name": "BCAT1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/586",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "branched chain amino-acid transaminase 1, cytosolic"
            },
            "metanode": "Gene"
        },
        {
            "id": 9740,
            "identifier": "9093",
            "identifier_type": "int",
            "name": "DNAJA3",
            "properties": {
                "url": "http://identifiers.org/ncbigene/9093",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "DnaJ (Hsp40) homolog, subfamily A, member 3"
            },
            "metanode": "Gene"
        },
        {
            "id": 9741,
            "identifier": "GO:0031127",
            "identifier_type": "str",
            "name": "alpha-(1,2)-fucosyltransferase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0031127",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 9742,
            "identifier": "GO:0044033",
            "identifier_type": "str",
            "name": "multi-organism metabolic process",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0044033",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 9743,
            "identifier": "C0030353",
            "identifier_type": "str",
            "name": "Papilloedema",
            "properties": {
                "url": "http://identifiers.org/umls/C0030353",
                "source": "UMLS via SIDER 4.1",
                "license": "CC BY-NC-SA 4.0"
            },
            "metanode": "Side Effect"
        },
        {
            "id": 9744,
            "identifier": "3055",
            "identifier_type": "int",
            "name": "HCK",
            "properties": {
                "url": "http://identifiers.org/ncbigene/3055",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "20",
                "description": "HCK proto-oncogene, Src family tyrosine kinase"
            },
            "metanode": "Gene"
        },
        {
            "id": 9745,
            "identifier": "57472",
            "identifier_type": "int",
            "name": "CNOT6",
            "properties": {
                "url": "http://identifiers.org/ncbigene/57472",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "5",
                "description": "CCR4-NOT transcription complex, subunit 6"
            },
            "metanode": "Gene"
        },
        {
            "id": 9746,
            "identifier": "GO:0038156",
            "identifier_type": "str",
            "name": "interleukin-3-mediated signaling pathway",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0038156",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 9749,
            "identifier": "GO:2000116",
            "identifier_type": "str",
            "name": "regulation of cysteine-type endopeptidase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_2000116",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 9750,
            "identifier": "51434",
            "identifier_type": "int",
            "name": "ANAPC7",
            "properties": {
                "url": "http://identifiers.org/ncbigene/51434",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "12",
                "description": "anaphase promoting complex subunit 7"
            },
            "metanode": "Gene"
        },
        {
            "id": 9751,
            "identifier": "GO:0006884",
            "identifier_type": "str",
            "name": "cell volume homeostasis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0006884",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 9752,
            "identifier": "DB06287",
            "identifier_type": "str",
            "name": "Temsirolimus",
            "properties": {
                "url": "http://www.drugbank.ca/drugs/DB06287",
                "inchi": "InChI=1S/C56H87NO16/c1-33-17-13-12-14-18-34(2)45(68-9)29-41-22-20-39(7)56(67,73-41)51(63)52(64)57-24-16-15-19-42(57)53(65)71-46(30-43(60)35(3)26-38(6)49(62)50(70-11)48(61)37(5)25-33)36(4)27-40-21-23-44(47(28-40)69-10)72-54(66)55(8,31-58)32-59/h12-14,17-18,26,33,35-37,39-42,44-47,49-50,58-59,62,67H,15-16,19-25,27-32H2,1-11H3/b14-12+,17-13+,34-18+,38-26+/t33-,35-,36-,37-,39-,40+,41+,42+,44-,45+,46+,47-,49-,50+,56-/m1/s1",
                "source": "DrugBank",
                "license": "CC BY-NC 4.0",
                "inchikey": "InChIKey=CBPNZQVSJQDFBE-FUXHJELOSA-N"
            },
            "metanode": "Compound"
        },
        {
            "id": 9753,
            "identifier": "PC7_6899",
            "identifier_type": "str",
            "name": "Regulation of cholesterol biosynthesis by SREBP (SREBF)",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 9754,
            "identifier": "23347",
            "identifier_type": "int",
            "name": "SMCHD1",
            "properties": {
                "url": "http://identifiers.org/ncbigene/23347",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "18",
                "description": "structural maintenance of chromosomes flexible hinge domain containing 1"
            },
            "metanode": "Gene"
        },
        {
            "id": 9755,
            "identifier": "84315",
            "identifier_type": "int",
            "name": "MON1A",
            "properties": {
                "url": "http://identifiers.org/ncbigene/84315",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "3",
                "description": "MON1 secretory trafficking family member A"
            },
            "metanode": "Gene"
        },
        {
            "id": 9756,
            "identifier": "92822",
            "identifier_type": "int",
            "name": "ZNF276",
            "properties": {
                "url": "http://identifiers.org/ncbigene/92822",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "16",
                "description": "zinc finger protein 276"
            },
            "metanode": "Gene"
        },
        {
            "id": 9757,
            "identifier": "GO:0070012",
            "identifier_type": "str",
            "name": "oligopeptidase activity",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0070012",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        },
        {
            "id": 9758,
            "identifier": "653220",
            "identifier_type": "int",
            "name": "XAGE1B",
            "properties": {
                "url": "http://identifiers.org/ncbigene/653220",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "X",
                "description": "X antigen family, member 1B"
            },
            "metanode": "Gene"
        },
        {
            "id": 9759,
            "identifier": "GO:0021913",
            "identifier_type": "str",
            "name": "regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0021913",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 9760,
            "identifier": "GO:2000136",
            "identifier_type": "str",
            "name": "regulation of cell proliferation involved in heart morphogenesis",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_2000136",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Biological Process"
        },
        {
            "id": 9761,
            "identifier": "6206",
            "identifier_type": "int",
            "name": "RPS12",
            "properties": {
                "url": "http://identifiers.org/ncbigene/6206",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "6",
                "description": "ribosomal protein S12"
            },
            "metanode": "Gene"
        },
        {
            "id": 9762,
            "identifier": "117196",
            "identifier_type": "int",
            "name": "MRGPRX4",
            "properties": {
                "url": "http://identifiers.org/ncbigene/117196",
                "source": "Entrez Gene",
                "license": "CC0 1.0",
                "chromosome": "11",
                "description": "MAS-related GPR, member X4"
            },
            "metanode": "Gene"
        },
        {
            "id": 9763,
            "identifier": "PC7_7473",
            "identifier_type": "str",
            "name": "Signaling by NOTCH3",
            "properties": {
                "source": "Reactome via Pathway Commons",
                "license": "CC BY 4.0"
            },
            "metanode": "Pathway"
        },
        {
            "id": 9764,
            "identifier": "GO:0016798",
            "identifier_type": "str",
            "name": "hydrolase activity, acting on glycosyl bonds",
            "properties": {
                "url": "http://purl.obolibrary.org/obo/GO_0016798",
                "source": "Gene Ontology",
                "license": "CC BY 4.0"
            },
            "metanode": "Molecular Function"
        }
    ]
}